This is not a theory, but I'm trying hard to ascertain if some things are true. If anyone has any insights into these questions, please comment, cos I think the right answers will solve the who is RJ puzzle.
1) Is the Tyger Tyger 'organization' independent of Red John, or is this something RJ started up and controls? It definitely has something to do with RJ cos RJ quotes those words to Jane in the episode where he saves Jane. But, on the other hand, I read somewhere that Heller mentioned that there was a corrupt ring of law enforcement officers thats going to be something the show will revolve around once the RJ thing is done. I can't remember where I read this, so I could be wrong.
2) Heller said that there was a clue in last sequence of episode 1, where Partridge dies, and Lisbon gets the smiley face. I'm wondering if this clue is the fact that Lisbon does NOT get killed, or the smiley on her face being different from other RJ smileys, or something to do with Partridge, or the pigeons, or the writing on the wall.
3) It really bugs me that Kirkland kills Lennon after just asking the latter if he recognises him, without asking for ANY info on RJ. If Lennon is a confirmed accomplice of RJ's, and Kirkland KNEW this, it is beyond obvious to get more info from him.
4) I have a very strong feeling that the person who is known by Rosalind Harker, who met Sophie Miller, and who saved Jane from the fake RedJohns is one and the same person, and is THE Red John. This individual was a powerful personality. It cannot be anyone but RJ.
5) Why does Jason Cooper appear in the episode Fire and Brimstone? It makes sense for him to be in Red Tattoo, but why is he in the next episode as well?
6) Who is the woman in the Red Tattoo (see the promo for the episode) who is getting attacked, and whom I think Jane tries to save, only he is too late? He turns around and tells Lisbon "Its Red John". Along the same lines, Haffner, in the same promo, WARNS Jane that the latter is going to get his comeuppance soon, and we see this mysterious woman getting attacked right after. Does this mean that Haffner knew something was going to happen? And Jane was desperate to get to the woman to save her, telling me she's really important to him somehow. Anyone have any ideas who she might be?
7) Does anyone else have a really bad feeling that something bad is about to happen to Rigsby/Van Pelt? I think one of them is going to get targeted by RJ, cos we've been told that they both leave the show, and it has something to do with RJ.
8) As for my main suspect, IF the list of 7 is true, and real, and RJ really is one of them, then I'll have to pick Haffner. He seems an obvious choice, but to me it would be a disappointment if it were him, cos he is NO WHERE near as charismatic as Jane, and definitely not someone to inspire undying loyalty in highly intelligent individuals.